STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER04836.1Predicted nuclease of the RNAse H fold, HicB family. (134 aa)    
Predicted Functional Partners:
SER31403.1
Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family.
   
 
 0.849
SER47253.1
Hypothetical protein.
  
     0.774
SER86500.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
   
 0.523
SER04762.1
Addiction module antidote protein, HigA family.
 
     0.519
SER04798.1
Hypothetical protein.
       0.505
SER95721.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
 
     0.410
Your Current Organism:
Pediococcus ethanolidurans
NCBI taxonomy Id: 319653
Other names: AS 1.3889, DSM 22301, LMG 23354, LMG:23354, P. ethanolidurans, Pediococcus ethanolidurans Liu et al. 2006, Pediococcus sp. Z-9, strain Z-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.