STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER39950.1Proton-dependent oligopeptide transporter, POT family. (492 aa)    
Predicted Functional Partners:
SER39984.1
Putative phosphoesterase.
       0.595
SER23274.1
Aminopeptidase N.
  
 
 0.584
SER41044.1
Hypothetical protein.
  
  
 0.576
SER06954.1
Putative endopeptidase.
 
  
 0.569
SER96117.1
Hypothetical protein.
   
  
 0.564
SER89948.1
Zinc-binding alcohol dehydrogenase family protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
  
    0.546
SER29875.1
Uncharacterized protein YdaT.
   
    0.545
SER22773.1
Dihydrofolate reductase.
   
    0.543
SER54692.1
Hypothetical protein.
   
    0.543
SER05589.1
Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).
  
 
 0.542
Your Current Organism:
Pediococcus ethanolidurans
NCBI taxonomy Id: 319653
Other names: AS 1.3889, DSM 22301, LMG 23354, LMG:23354, P. ethanolidurans, Pediococcus ethanolidurans Liu et al. 2006, Pediococcus sp. Z-9, strain Z-9
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