STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER81289.1Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling). (322 aa)    
Predicted Functional Partners:
SER81263.1
Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling).
 
    
0.753
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
 0.581
SER51610.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.561
SER45292.1
Catechol 2,3-dioxygenase.
    
  0.553
SER55516.1
Nicotinamidase-related amidase.
 
     0.463
SER31029.1
Ribosomal protein S18 acetylase RimI.
 
    0.442
SER81210.1
Protein of unknown function.
       0.440
SER81236.1
RNA polymerase, sigma subunit, SigV; Belongs to the sigma-70 factor family. ECF subfamily.
       0.440
SER81312.1
Hypothetical protein.
       0.420
Your Current Organism:
Pediococcus ethanolidurans
NCBI taxonomy Id: 319653
Other names: AS 1.3889, DSM 22301, LMG 23354, LMG:23354, P. ethanolidurans, Pediococcus ethanolidurans Liu et al. 2006, Pediococcus sp. Z-9, strain Z-9
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