STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_0085Ferredoxin-like protein, DUF326; PFAM: protein of unknown function DUF326: (0.073); KEGG: tfu:Tfu_1443 hypothetical protein, ev=3e-37, 54% identity. (141 aa)    
Predicted Functional Partners:
Dgeo_0086
PFAM: protein of unknown function DUF305: (1e-20); KEGG: par:Psyc_0285 hypothetical protein, ev=4e-19, 33% identity.
 
     0.633
Dgeo_0042
PFAM: cyclase/dehydrase: (3.6e-23); KEGG: dra:DRA0006 hypothetical protein, ev=1e-46, 47% identity.
 
     0.525
Dgeo_0114
PFAM: cyclase/dehydrase: (1.7e-33); KEGG: dra:DR2377 hypothetical protein, ev=1e-101, 86% identity.
 
     0.517
Dgeo_1309
PFAM: Ion transport 2: (1.2e-06); KEGG: dra:DR1911 hypothetical protein, ev=1e-75, 47% identity.
  
     0.501
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.