STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_0526PFAM: OsmC-like protein: (5.6e-29); KEGG: dra:DR1538 osmotically inducible protein C, ev=3e-56, 72% identity. (145 aa)    
Predicted Functional Partners:
Dgeo_0525
PFAM: alpha/beta hydrolase fold: (8.2e-15); KEGG: dra:DR1537 lipase, putative, ev=1e-98, 68% identity.
       0.796
Dgeo_1789
Diguanylate cyclase with GAF sensor; TIGRFAM: GGDEF domain: (1.7e-05); PFAM: GGDEF: (4.2e-06) GAF: (4.2e-18); KEGG: dra:DRB0044 GGDEF family protein, ev=1e-42, 31% identity.
 
    0.491
Dgeo_0281
PFAM: Ferritin and Dps: (5.1e-29); KEGG: dra:DR2263 DNA-binding stress response protein, Dps family, ev=6e-87, 77% identity; Belongs to the Dps family.
  
  
 0.489
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.