STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_0875Uncharacterized secreted protein containing TPR-like repeats; KEGG: dra:DR1200 hypothetical protein, ev=1e-83, 66% identity. (231 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.982
Dgeo_1884
PFAM: Ankyrin: (2.3e-07); KEGG: dra:DR1961 ankyrin-related protein, ev=3e-28, 52% identity.
  
 0.978
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.961
Dgeo_2055
PFAM: nitrogen regulatory protein P-II: (3.6e-48); KEGG: dra:DR0692 nitrogen regulatory protein P-II, ev=1e-55, 88% identity; Belongs to the P(II) protein family.
    
 
 0.946
Dgeo_0156
PFAM: beta-lactamase-like: (3.5e-19) RNA-metabolising metallo-beta-lactamase: (2.3e-13); KEGG: dra:DRA0069 metallo-beta-lactamase family protein, ev=0.0, 72% identity.
  
 0.900
Dgeo_1684
PFAM: chalcone and stilbene synthases-like: (1.1e-07) Chalcone and stilbene synthases-like: (6.6e-18) FAE1/Type III polyketide synthase-like protein: (0.00014) 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal: (2.9e-09); KEGG: dra:DR2091 chalcone synthase, putative, ev=1e-152, 77% identity.
    
 0.900
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
  0.899
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.857
Dgeo_1540
SMART: WD-40 repeat: (0.45); KEGG: ana:all0438 serine/threonine kinase with WD-40 repeat, ev=4e-16, 23% identity.
   
 0.853
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.836
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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