STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_0927KEGG: cte:CT1159 type III restriction system methylase, ev=8e-94, 77% identity. (213 aa)    
Predicted Functional Partners:
Dgeo_0926
Adenine-specific DNA methylase; PFAM: Eco57I restriction endonuclease: (1.3e-53); KEGG: cte:CT1160 type III restriction system endonuclease, putative, ev=1e-138, 75% identity.
 
   
 0.951
Dgeo_0924
Adenine-specific DNA methylase; KEGG: cte:CT1160 type III restriction system endonuclease, putative, ev=1e-20, 39% identity.
   
 0.892
Dgeo_2016
PFAM: restriction modification system DNA specificity domain: (7.8e-18); KEGG: mca:MCA0836 type I restriction-modification system, S subunit, EcoA family, ev=1e-143, 63% identity.
  
 
 0.867
Dgeo_2012
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.819
Dgeo_0923
KEGG: cte:CT1161 type III restriction system endonuclease, putative, ev=0.0, 82% identity.
 
   
 0.797
Dgeo_2015
PFAM: protein of unknown function DUF262: (6.9e-23); KEGG: tma:TM0991 hypothetical protein, ev=1e-172, 52% identity.
  
    0.744
Dgeo_0928
Transposase, IS605 OrfB; PFAM: putative transposase, IS891/IS1136/IS1341: (0.00029) transposase, IS605 OrfB: (8.4e-26); KEGG: tma:TM0135 transposase, putative, ev=4e-73, 39% identity.
       0.678
Dgeo_2013
DOC domain and unchracterized virulence related domain; PFAM: Death-on-curing protein: (0.00038); KEGG: eba:ebA3754 putative death-on-curing family protein, ev=1e-113, 63% identity.
  
    0.514
Dgeo_0929
ATPase component of ABC transporter containing duplicated ATPase domain; PFAM: ABC transporter related: (8.7e-42); SMART: ATPase: (4.7e-19); KEGG: dra:DR1635 ABC transporter, ATP-binding protein, EF-3 family, ev=0.0, 79% identity.
       0.492
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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