STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lntApolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (498 aa)    
Predicted Functional Partners:
Dgeo_1115
PFAM: metallophosphoesterase: (1.1e-10); KEGG: dra:DR1360 hypothetical protein, ev=1e-108, 79% identity.
       0.799
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
 0.567
Dgeo_1754
PFAM: MotA/TolQ/ExbB proton channel: (2.7e-19); KEGG: dra:DR0456 biopolymer transport protein, putative, ev=4e-75, 70% identity.
  
   
 0.511
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.484
Dgeo_0813
Lipoprotein releasing system, permease, LolC/E family; PFAM: protein of unknown function DUF214: (5.7e-49); KEGG: dra:DR0487 putative lipoprotein releasing system transmembrane protein, ev=1e-162, 77% identity.
 
   
 0.474
Dgeo_0049
PFAM: permease YjgP/YjgQ: (2.9e-60); KEGG: dra:DR2431 hypothetical protein, ev=1e-132, 69% identity.
 
    0.471
Dgeo_1183
PFAM: permease YjgP/YjgQ: (1.3e-63); KEGG: dra:DR1075 hypothetical protein, ev=1e-170, 80% identity.
 
    0.436
Dgeo_2003
TIGRFAM: integral membrane protein MviN: (5e-165); PFAM: virulence factor MVIN-like: (2.4e-126); KEGG: dra:DR0498 virulence factor-related protein, ev=0.0, 74% identity.
 
   
 0.436
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.