STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_1117PFAM: phage integrase: (8.4e-17) phage integrase-like SAM-like: (0.00068); KEGG: pac:PPA1388 site-specific recombinase, ev=6e-26, 33% identity; Belongs to the 'phage' integrase family. (369 aa)    
Predicted Functional Partners:
Dgeo_1654
PFAM: cell divisionFtsK/SpoIIIE: (2.8e-74); SMART: ATPase: (1.8e-08); KEGG: dra:DR0400 cell division protein FtsK, putative, ev=0.0, 77% identity; Belongs to the FtsK/SpoIIIE/SftA family.
 
   
 0.716
Dgeo_2333
TIGRFAM: parB-like partition proteins: (6.6e-47); PFAM: ParB-like nuclease: (8.8e-32); KEGG: dra:DR0012 chromosome partitioning protein, ev=1e-118, 76% identity; Belongs to the ParB family.
  
  
 0.585
Dgeo_1118
PFAM: diacylglycerol kinase, catalytic region: (4.4e-19); KEGG: dra:DR1363 hypothetical protein, ev=1e-131, 75% identity.
       0.581
Dgeo_0938
KEGG: dra:DR1389 competence protein ComF, putative, ev=2e-72, 65% identity.
  
    0.502
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.499
Dgeo_2334
ATPase involved in plasmide/chromosome partitioning, ParA/Soj-like protein; PFAM: Cobyrinic acid a,c-diamide synthase: (5.4e-52); KEGG: dra:DR0013 chromosome partitioning ATPase Soj, ev=1e-120, 87% identity.
 
   
 0.497
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.475
Dgeo_1119
PFAM: cell surface receptor IPT/TIG: (8.7e-05); KEGG: dra:DR1364 hypothetical protein, ev=4e-39, 67% identity.
       0.470
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
  
 0.439
Dgeo_1040
Prephenate dehydrogenase; PFAM: amino acid-binding ACT: (9.4e-08) Prephenate dehydrogenase: (4.2e-81); KEGG: dra:DR1122 prephenate dehydrogenase, ev=1e-166, 83% identity.
  
    0.420
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.