STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_1258KEGG: dra:DR1178 hypothetical protein, ev=4e-70, 56% identity. (271 aa)    
Predicted Functional Partners:
Dgeo_1257
TIGRFAM: Homocitrate synthase, fungi and archaea: (7.9e-185); PFAM: pyruvate carboxyltransferase: (1.9e-70); KEGG: dra:DR1238 homocitrate synthase, ev=0.0, 90% identity; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
    0.807
Dgeo_1259
TIGRFAM: benzoate transporter: (3.3e-86); PFAM: Benzoate membrane transport protein: (4e-136) Xanthine/uracil/vitamin C permease: (0.014); KEGG: rru:Rru_A1144 benzoate membrane transport protein, ev=2e-78, 43% identity.
       0.792
Dgeo_1011
Phospholipase D-like domains; KEGG: dra:DR1179 hypothetical protein, ev=1e-143, 56% identity.
 
     0.782
Dgeo_0364
KEGG: dra:DR0269 hypothetical protein, ev=9e-77, 57% identity.
 
    0.779
Dgeo_1619
PFAM: N-formylglutamate amidohydrolase: (2.6e-57); KEGG: dra:DR1397 hypothetical protein, ev=2e-99, 71% identity.
  
     0.773
Dgeo_0508
PFAM: protein of unknown function DUF490: (0.00011); KEGG: dra:DR1461 hypothetical protein, ev=0.0, 48% identity.
  
     0.772
Dgeo_1291
KEGG: dra:DR1985 beta-lactamase, putative, ev=1e-133, 60% identity.
  
     0.772
Dgeo_1817
KEGG: dra:DR0855 hypothetical protein, ev=0.0, 59% identity.
  
     0.771
Dgeo_1645
KEGG: dra:DR1406 hypothetical protein, ev=1e-38, 59% identity.
  
     0.770
Dgeo_1768
KEGG: dra:DR0573 hypothetical protein, ev=0.0, 57% identity.
  
     0.770
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.