STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_1494PFAM: 2-nitropropane dioxygenase, NPD: (1.5e-10); KEGG: sil:SPOA0325 oxidoreductase, 2-nitropropane dioxygenase family, ev=2e-46, 51% identity. (188 aa)    
Predicted Functional Partners:
Dgeo_1493
KEGG: cvi:CV4048 probable 2-nitropropane dioxygenase, ev=1e-28, 50% identity.
  
  0.999
Dgeo_1495
PFAM: peptidase S1 and S6, chymotrypsin/Hap: (1.5e-06); SMART: PDZ/DHR/GLGF: (9.8e-15); KEGG: gvi:glr3741 serine protease, ev=6e-35, 33% identity.
       0.786
Dgeo_1496
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR: (8.9e-20) Sigma-70, region 4 type 2: (0.0037); KEGG: sco:SCO5455 two-component system response regulator, ev=2e-16, 34% identity.
       0.783
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.547
Dgeo_1497
TIGRFAM: purine nucleoside phosphorylase: (9.8e-129); PFAM: purine and other phosphorylases, family 1: (1.2e-96); KEGG: dra:DR2166 purine nucleoside phosphorylase, ev=1e-109, 81% identity.
       0.547
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.544
Dgeo_0437
Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
  
 0.542
Dgeo_1491
Superfamily II DNA/RNA helicase, SNF2 family; PFAM: SNF2-related: (1e-70) helicase-like: (3.2e-21); SMART: DEAD/DEAH box helicase-like: (3.5e-30); KEGG: dar:Daro_3870 SNF2-related:helicase, C-terminal:SWIM Zn-finger, ev=0.0, 45% identity.
       0.536
Dgeo_1490
PFAM: peptidase C39, bacteriocin processing: (0.00011); KEGG: dvu:DVU2613 hypothetical protein, ev=3e-07, 25% identity.
       0.495
Dgeo_0434
TIGRFAM: malonyl CoA-acyl carrier protein transacylase: (1.8e-118); PFAM: acyl transferase region: (1.8e-14); KEGG: dra:DR1945 malonyl CoA-acyl carrier protein transacylase, ev=1e-126, 76% identity.
  
  
 0.475
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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