STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_1621Zn-finger containing protein; KEGG: dra:DR1088 hypothetical protein, ev=1e-96, 63% identity. (287 aa)    
Predicted Functional Partners:
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
  
 0.880
Dgeo_1619
PFAM: N-formylglutamate amidohydrolase: (2.6e-57); KEGG: dra:DR1397 hypothetical protein, ev=2e-99, 71% identity.
 
     0.875
Dgeo_1768
KEGG: dra:DR0573 hypothetical protein, ev=0.0, 57% identity.
  
     0.740
atpE
V-type H+-ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.740
Dgeo_1425
PFAM: surface antigen (D15): (1.1e-40) surface antigen variable number: (1.7e-12) Polypeptide-transport-associated, ShlB-type: (2.6e-07); KEGG: dra:DR0379 outer membrane protein, ev=0.0, 64% identity.
  
     0.731
Dgeo_0204
PFAM: E3 binding: (2.4e-13); KEGG: dra:DR0131 hypothetical protein, ev=4e-66, 37% identity.
  
     0.725
Dgeo_2183
TPR repeat protein; PFAM: Tetratricopeptide TPR_4: (0.021) Tetratricopeptide TPR_2: (0.0045); SMART: Tetratricopeptide region: (0.18); KEGG: dra:DRA0288 hypothetical protein, ev=1e-142, 74% identity.
  
     0.716
Dgeo_1316
KEGG: dra:DR1115 S-layer-like array-related protein, ev=1e-156, 66% identity.
  
     0.713
Dgeo_0508
PFAM: protein of unknown function DUF490: (0.00011); KEGG: dra:DR1461 hypothetical protein, ev=0.0, 48% identity.
  
     0.708
Dgeo_0481
PFAM: GCN5-related N-acetyltransferase: (7.1e-14); KEGG: dra:DR0213 hypothetical protein, ev=4e-96, 64% identity.
  
     0.707
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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