STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_1718PFAM: Uracil-DNA glycosylase superfamily: (8.2e-20); KEGG: dra:DR0715 G/U mismatch-specific DNA glycosylase, ev=2e-71, 78% identity. (195 aa)    
Predicted Functional Partners:
Dgeo_1719
PFAM: oxidoreductase, molybdopterin binding: (2e-56); KEGG: dra:DR0716 hypothetical protein, ev=7e-96, 80% identity.
       0.840
Dgeo_1717
KEGG: dra:DR0714 hypothetical protein, ev=2e-43, 53% identity.
       0.801
Dgeo_1720
KEGG: ttj:TTHA1581 hypothetical protein, ev=3e-79, 51% identity.
       0.781
Dgeo_0461
KEGG: dra:DR0354 exodeoxyribonuclease III, ev=1e-100, 70% identity; TIGRFAM: exodeoxyribonuclease III: (3.6e-54) exodeoxyribonuclease III (xth): (5.4e-65); PFAM: Endonuclease/exonuclease/phosphatase: (1.2e-47).
  
 
 0.613
Dgeo_0268
Nitric-oxide synthase; Catalyzes the production of nitric oxide. Belongs to the NOS family. Bacterial NOS oxygenase subfamily.
  
     0.496
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.434
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.