STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_1980PFAM: glutamine cyclotransferase: (2.2e-135); KEGG: dra:DR0112 glutamine cyclotransferase, ev=2e-98, 65% identity. (289 aa)    
Predicted Functional Partners:
Dgeo_1979
Epoxide Hydrolase; KEGG: dra:DR1803 hypothetical protein, ev=1e-36, 60% identity.
 
     0.845
Dgeo_1978
Domain of unknown function DUF1730; PFAM: HEAT: (0.0045) 4Fe-4S ferredoxin, iron-sulfur binding: (0.00021) Domain of unknown function DUF1730: (6.9e-12); SMART: PBS lyase HEAT-like repeat: (3.8e-06); KEGG: tth:TTC0112 iron-sulfur cluster-binding protein, ev=5e-88, 51% identity.
       0.793
Dgeo_0857
TIGRFAM: Lycopene cyclase, beta and epsilon: (5.7e-141); PFAM: Lycopene beta and epsilon cyclase: (2.9e-45); KEGG: dra:DR0801 lycopene cyclase, ev=1e-130, 61% identity.
  
     0.695
Dgeo_1981
Glyoxalase/Dioxygenase family protein; KEGG: dra:DR0109 hypothetical protein, ev=6e-43, 66% identity.
       0.601
Dgeo_1982
NIF3 family protein, DUF34; PFAM: protein of unknown function DUF34: (1.9e-87); KEGG: dra:DR0110 hypothetical protein, ev=1e-122, 79% identity.
       0.574
Dgeo_1277
Predicted RNA-binding protein associated with RNAse G/E; KEGG: nfa:nfa19010 hypothetical protein, ev=2e-23, 37% identity.
  
     0.469
Dgeo_1977
PFAM: peptidase M16-like: (1.2e-33); KEGG: dra:DR1598 protease, putative, ev=0.0, 71% identity; Belongs to the peptidase M16 family.
       0.453
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.431
Dgeo_0624
Glycolate oxidase subunit, GlcD; PFAM: FAD linked oxidase-like: (2.4e-89); KEGG: dra:DR1731 glycolate oxidase subunit GlcD, ev=0.0, 80% identity.
    
   0.422
Dgeo_0625
KEGG: dra:DR1732 glycolate oxidase subunit GlcE, ev=2e-88, 75% identity.
    
   0.422
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.