STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dgeo_2269RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2: (2.2e-20) sigma-70 region 4: (1.1e-16) Sigma-70, region 4 type 2: (7.5e-19); KEGG: sco:SCO3892 putative RNA polymerase sigma factor, ev=3e-23, 43% identity; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)    
Predicted Functional Partners:
Dgeo_2271
Putative sigma E regulatory protein, MucB/RseB.
  
 
 0.861
Dgeo_2268
PFAM: regulatory protein, MarR: (0.0025) iron dependent repressor: (6.9e-17) FeoA: (4.4e-09); KEGG: dra:DR2539 iron dependent repressor, putative, ev=1e-92, 79% identity.
  
    0.802
Dgeo_2270
Hypothetical protein.
       0.791
Dgeo_2279
KEGG: bpm:BURPS1710b_2504 hypothetical protein, ev=2e-52, 41% identity.
       0.678
Dgeo_2280
Predicted arylsulfatase family enzyme, twin-arginine signal; TIGRFAM: Twin-arginine translocation pathway signal: (0.00036); PFAM: protein of unknown function DUF1501: (1.9e-12); KEGG: cvi:CV3166 hypothetical protein, ev=4e-58, 37% identity.
       0.678
Dgeo_2281
Hypothetical protein.
       0.678
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.656
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.632
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.505
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.504
Your Current Organism:
Deinococcus geothermalis
NCBI taxonomy Id: 319795
Other names: D. geothermalis DSM 11300, Deinococcus geothermalis AG-3a, Deinococcus geothermalis CIP 105573, Deinococcus geothermalis DSM 11300, Deinococcus geothermalis str. DSM 11300, Deinococcus geothermalis strain DSM 11300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.