STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA40803.1Glycine betaine/proline transport system substrate-binding protein. (311 aa)    
Predicted Functional Partners:
SFA44453.1
ABC-type proline/glycine betaine transport system, ATPase component.
 0.998
SFA40689.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.995
SFA40681.1
Glycine betaine/proline transport system permease protein.
 
 0.984
SFA40667.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.831
SFA44465.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
  0.765
SFA40811.1
Uncharacterized conserved protein, DUF849 family.
 
  
 0.750
SFA40793.1
AraC family transcriptional regulator, carnitine catabolism transcriptional activator.
 
   
 0.690
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
   
 0.683
SFA57946.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.669
SFA40697.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.668
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.