STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA41600.1Prophage antirepressor. (156 aa)    
Predicted Functional Partners:
SFA57748.1
TraX protein.
  
     0.644
SFA66947.1
TraX protein.
  
     0.630
SFA57771.1
TniQ protein.
  
     0.620
SFA68093.1
TraX protein.
  
     0.604
SFA45567.1
Protein of unknown function.
  
     0.540
SFA57773.1
Tn7-like transposition protein D.
  
     0.522
SFA64382.1
Hypothetical protein.
  
     0.469
SFA57782.1
TnsA endonuclease N terminal.
  
     0.457
SFA57779.1
Mu transposase, C-terminal.
  
     0.449
SFA64388.1
Transposase domain.
  
     0.449
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.