STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA45113.1Transglutaminase-like cysteine proteinase BTLCP. (232 aa)    
Predicted Functional Partners:
SFA45121.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.980
SFA59859.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.927
SFA44745.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.807
SFA67014.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.806
SFA67012.1
Outer membrane protein, adhesin transport system.
 
   
 0.803
SFA44735.1
Outer membrane protein, adhesin transport system.
 
   
 0.802
SFA67016.1
Membrane fusion protein, adhesin transport system.
 
  
 0.785
SFA44753.1
Membrane fusion protein, adhesin transport system.
 
  
 0.781
SFA44691.1
Hypothetical protein.
 
     0.762
SFA67009.1
Hypothetical protein.
 
     0.746
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.