STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA49668.1PQQ-dependent catabolism-associated CXXCW motif protein. (180 aa)    
Predicted Functional Partners:
SFA52046.1
Quinoprotein relay system zinc metallohydrolase 1.
 
 0.907
SFA52056.1
Sulfur-oxidizing protein SoxY.
 
  
 0.875
SFA52064.1
Cytochrome c-550 PedF.
 
  
 0.823
SFA49661.1
Two component transcriptional regulator, LuxR family.
 
  
 0.820
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.815
rpsQ
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.801
SFA52073.1
Alcohol dehydrogenase (cytochrome c).
 
   
 0.785
rplQ
LSU ribosomal protein L17P.
  
   0.782
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.778
SFA48298.1
Adenylyltransferase and sulfurtransferase.
    
 0.771
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.