STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA61181.1Transglutaminase-like enzyme, putative cysteine protease. (310 aa)    
Predicted Functional Partners:
SFA61175.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
 
  
 0.978
SFA55276.1
Uncharacterized conserved protein, Alpha-E superfamily.
  
 0.875
SFA55270.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
 
  
 0.860
SFA61171.1
Uncharacterized conserved protein, DUF2126 family.
 
    
0.800
SFA45606.1
Catalase; Belongs to the catalase family.
   
   0.637
SFA56208.1
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
   0.637
SFA63497.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
   0.637
SFA45043.1
Catalase.
   
   0.628
SFA55295.1
Putative proteasome-type protease.
 
    0.603
uvrA
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
    
  0.446
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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