STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA64639.1Protein of unknown function. (236 aa)    
Predicted Functional Partners:
SFA64633.1
Hypothetical protein.
 
     0.865
SFA43932.1
Protein of unknown function.
 
 
  0.831
SFA65573.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
 
 0.828
algL
poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
 
 0.827
SFA50818.1
Alginate lyase.
 
 0.811
SFA40553.1
Alginate lyase.
 
 0.810
SFA62941.1
poly(beta-D-mannuronate) lyase.
 
 0.803
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
       0.786
purN
Phosphoribosylglycinamide formyltransferase-1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.786
SFA53091.1
Subtilase family protein.
  
 0.766
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.