STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA64448.1Putative phage holin. (124 aa)    
Predicted Functional Partners:
SFA64446.1
Putative 3TM holin, Phage_holin_3.
  
    0.919
SFA64444.1
Hypothetical protein.
  
    0.821
SFA64442.1
Protein of unknown function.
       0.541
SFA64426.1
Hypothetical protein.
       0.468
SFA64451.1
Hypothetical protein.
       0.468
SFA47554.1
Putative chitinase.
  
    0.449
SFA64428.1
Hypothetical protein.
       0.424
SFA64430.1
Hypothetical protein.
       0.424
SFA64432.1
Hypothetical protein.
       0.424
SFA64434.1
Hypothetical protein.
       0.424
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.