STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA64998.1Diguanylate cyclase (GGDEF) domain-containing protein. (395 aa)    
Predicted Functional Partners:
SFA65104.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.963
SFA64252.1
PAS domain S-box-containing protein.
 0.924
SFA40852.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.923
SFA67342.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
 0.913
SFA65553.1
PAS domain S-box-containing protein.
 0.909
SFA60946.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.890
SFA65552.1
Diguanylate cyclase (GGDEF) domain-containing protein.
0.889
SFA64352.1
Polar amino acid transport system substrate-binding protein.
  
 0.880
SFA64315.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.872
SFA61581.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.871
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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