STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA66311.1Type IV pilus assembly protein PilC. (405 aa)    
Predicted Functional Partners:
SFA66313.1
Type IV pilus assembly protein PilB.
 
 
 0.991
SFA66309.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.975
SFA48525.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.962
SFA63342.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.962
SFA63235.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.962
SFA67268.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.962
SFA65345.1
General secretion pathway protein E.
 
 
 0.960
SFA67211.1
Type IV pilus assembly protein PilM.
 
 
 
 0.893
SFA67217.1
Type IV pilus assembly protein PilQ.
 
 
 
 0.862
SFA40235.1
Pilus retraction ATPase PilT.
 
  
 0.816
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.