STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA66778.1SnoaL-like domain-containing protein. (141 aa)    
Predicted Functional Partners:
SFA66780.1
Short-chain dehydrogenase.
 
   
 0.955
SFA66782.1
Predicted NAD/FAD-binding protein.
 
   
 0.954
SFA66784.1
Hypothetical protein.
 
   
 0.954
SFA66788.1
Protein of unknown function.
 
   
 0.939
SFA66786.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.917
SFA66775.1
DNA-binding transcriptional regulator, MerR family.
 
   
 0.863
SFA66772.1
Uncharacterized conserved protein YbgA, DUF1722 family.
 
    0.841
SFA66777.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
     0.829
SFA45535.1
Protein of unknown function.
 
     0.795
SFA48092.1
Chalcone isomerase-like.
 
     0.725
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.