STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA67895.1Protein of unknown function. (136 aa)    
Predicted Functional Partners:
SFA67896.1
Outer membrane protein OmpA.
 
 
 0.894
SFA40306.1
Protein TonB.
    
   0.837
SFA38618.1
Protein TonB.
    
   0.837
SFA64371.1
Hypothetical protein.
    
   0.837
SFA64532.1
A-factor biosynthesis hotdog domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
    
   0.837
SFA65443.1
Protein TonB.
    
   0.837
SFA40162.1
Protein of unknown function.
    
 
 0.827
SFA48398.1
Protein of unknown function.
    
 
 0.827
SFA57157.1
Protein of unknown function.
    
 
 0.827
SFA61924.1
Protein of unknown function.
    
 
 0.827
Your Current Organism:
Pseudomonas otitidis
NCBI taxonomy Id: 319939
Other names: DSM 17224, P. otitidis, Pseudomonas otitidis Clark et al. 2006, strain MCC10330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.