STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJG36178.1Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family. (196 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.981
OJG36175.1
Cysteine desulfurase.
 
 
 
 0.970
OJG36176.1
Selenocysteine-specific translation elongation factor.
 
   
 0.951
OJG35643.1
Cysteine desulfurase.
   
 0.915
OJG35789.1
Class V aminotransferase.
   
 0.915
OJG35301.1
Hypothetical protein.
  
 
 0.892
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.844
OJG36266.1
CoA disulfide reductase.
  
 
 0.843
OJG36338.1
Pyridine nucleotide-disulfide oxidoreductase.
  
 
 0.843
OJG37094.1
Hypothetical protein.
 
    0.819
Your Current Organism:
Enterococcus devriesei
NCBI taxonomy Id: 319970
Other names: CCM 7299, CCUG 37865, DSM 22802, E. devriesei, Enterococcus devriesei Svec et al. 2005, LMG 14595, LMG:14595
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