Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG35060.1 | OJG35061.1 | RV00_GL003079 | RV00_GL003080 | 3-dehydroquinate dehydratase, type I. | Hypothetical protein. | 0.867 |
OJG35060.1 | OJG35062.1 | RV00_GL003079 | RV00_GL003081 | 3-dehydroquinate dehydratase, type I. | Sulfatase. | 0.544 |
OJG35060.1 | aroD | RV00_GL003079 | RV00_GL000730 | 3-dehydroquinate dehydratase, type I. | 3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.907 |
OJG35061.1 | OJG35060.1 | RV00_GL003080 | RV00_GL003079 | Hypothetical protein. | 3-dehydroquinate dehydratase, type I. | 0.867 |
OJG35061.1 | OJG35062.1 | RV00_GL003080 | RV00_GL003081 | Hypothetical protein. | Sulfatase. | 0.790 |
OJG35061.1 | OJG35785.1 | RV00_GL003080 | RV00_GL002539 | Hypothetical protein. | FolC protein; Belongs to the folylpolyglutamate synthase family. | 0.475 |
OJG35061.1 | OJG36525.1 | RV00_GL003080 | RV00_GL001884 | Hypothetical protein. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.485 |
OJG35061.1 | OJG36576.1 | RV00_GL003080 | RV00_GL001935 | Hypothetical protein. | dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.516 |
OJG35061.1 | OJG36921.1 | RV00_GL003080 | RV00_GL001366 | Hypothetical protein. | Methylase; Belongs to the methyltransferase superfamily. | 0.891 |
OJG35061.1 | OJG37235.1 | RV00_GL003080 | RV00_GL000192 | Hypothetical protein. | 16S rRNA pseudouridylate synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.483 |
OJG35061.1 | aroD | RV00_GL003080 | RV00_GL000730 | Hypothetical protein. | 3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.607 |
OJG35061.1 | folD | RV00_GL003080 | RV00_GL000325 | Hypothetical protein. | FolD protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.501 |
OJG35061.1 | glyA | RV00_GL003080 | RV00_GL000259 | Hypothetical protein. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.506 |
OJG35062.1 | OJG35060.1 | RV00_GL003081 | RV00_GL003079 | Sulfatase. | 3-dehydroquinate dehydratase, type I. | 0.544 |
OJG35062.1 | OJG35061.1 | RV00_GL003081 | RV00_GL003080 | Sulfatase. | Hypothetical protein. | 0.790 |
OJG35062.1 | aroD | RV00_GL003081 | RV00_GL000730 | Sulfatase. | 3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.577 |
OJG35785.1 | OJG35061.1 | RV00_GL002539 | RV00_GL003080 | FolC protein; Belongs to the folylpolyglutamate synthase family. | Hypothetical protein. | 0.475 |
OJG35785.1 | folD | RV00_GL002539 | RV00_GL000325 | FolC protein; Belongs to the folylpolyglutamate synthase family. | FolD protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.555 |
OJG35785.1 | glyA | RV00_GL002539 | RV00_GL000259 | FolC protein; Belongs to the folylpolyglutamate synthase family. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.712 |
OJG36525.1 | OJG35061.1 | RV00_GL001884 | RV00_GL003080 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.485 |
page 1 of 2