Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OLU09951.1Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)    
Predicted Functional Partners:
OLU09950.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.925
OLU00008.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.863
OLU08854.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.858
OLU10393.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.855
OLU08839.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.855
BVK87_00180
ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.854
gsiD
Glutathione ABC transporter permease GsiD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.854
OLU08174.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.854
OLU09599.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.853
OLU00436.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.853
Your Current Organism:
Achromobacter denitrificans
NCBI taxonomy Id: 32002
Other names: A. denitrificans, ATCC 15173, Achromobacter xylosoxidans subsp. denitrificans, Alcaligenes denitrificans, Alcaligenes denitrificans denitrificans, Alcaligenes denitrificans subsp. denitrificans, Alcaligenes xylosoxidans subsp. denitrificans, Alcaligenes xylosoxydans denitrificans, CCUG 407, CIP 77.15, DSM 30026, IFO 15125, JCM 5490, JCM 9657, NBRC 15125, NCTC 8582
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