OLU08963.1 protein (Achromobacter denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OLU08963.1

Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)

Predicted Functional Partners:

OLU06459.1

0.766

OLU07207.1

0.750

OLU09138.1

0.749

OLU04473.1

0.737

OLU07213.1

0.736

OLU08960.1

0.670

OLU08961.1

0.613

maiA

0.613

OLU08964.1

0.550

OLU10063.1

0.549

Your Current Organism:

Achromobacter denitrificans

NCBI taxonomy Id: 32002
Other names: A. denitrificans, ATCC 15173, Achromobacter xylosoxidans subsp. denitrificans, Alcaligenes denitrificans, Alcaligenes denitrificans denitrificans, Alcaligenes denitrificans subsp. denitrificans, Alcaligenes xylosoxidans subsp. denitrificans, Alcaligenes xylosoxydans denitrificans, CCUG 407, CIP 77.15, DSM 30026, IFO 15125, JCM 5490, JCM 9657, NBRC 15125, NCTC 8582

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OLU04473.1	OLU08960.1	BVK87_23555	BVK87_07095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
OLU04473.1	OLU08963.1	BVK87_23555	BVK87_07110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
OLU06459.1	OLU08960.1	BVK87_20040	BVK87_07095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
OLU06459.1	OLU08963.1	BVK87_20040	BVK87_07110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
OLU07207.1	OLU08960.1	BVK87_16260	BVK87_07095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
OLU07207.1	OLU08963.1	BVK87_16260	BVK87_07110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
OLU07213.1	OLU08960.1	BVK87_16290	BVK87_07095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
OLU07213.1	OLU08963.1	BVK87_16290	BVK87_07110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
OLU08960.1	OLU04473.1	BVK87_07095	BVK87_23555	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
OLU08960.1	OLU06459.1	BVK87_07095	BVK87_20040	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
OLU08960.1	OLU07207.1	BVK87_07095	BVK87_16260	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
OLU08960.1	OLU07213.1	BVK87_07095	BVK87_16290	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
OLU08960.1	OLU08961.1	BVK87_07095	BVK87_07100	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
OLU08960.1	OLU08963.1	BVK87_07095	BVK87_07110	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
OLU08960.1	OLU08964.1	BVK87_07095	BVK87_07115	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
OLU08960.1	OLU09138.1	BVK87_07095	BVK87_07000	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
OLU08960.1	OLU10063.1	BVK87_07095	BVK87_01110	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
OLU08960.1	maiA	BVK87_07095	BVK87_07105	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
OLU08961.1	OLU08960.1	BVK87_07100	BVK87_07095	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
OLU08961.1	OLU08963.1	BVK87_07100	BVK87_07110	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About