STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLU06312.1GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)    
Predicted Functional Partners:
OLT98851.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.863
OLU08530.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.843
OLU06883.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.841
OLU09050.1
EAL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.832
OLU08531.1
GGDEF-domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.812
OLU06692.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.794
OLU07743.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.787
OLU06639.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.787
OLU10367.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.778
OLU09965.1
Cyclic diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.778
Your Current Organism:
Achromobacter denitrificans
NCBI taxonomy Id: 32002
Other names: A. denitrificans, ATCC 15173, Achromobacter xylosoxidans subsp. denitrificans, Alcaligenes denitrificans, Alcaligenes denitrificans denitrificans, Alcaligenes denitrificans subsp. denitrificans, Alcaligenes xylosoxidans subsp. denitrificans, Alcaligenes xylosoxydans denitrificans, CCUG 407, CIP 77.15, DSM 30026, IFO 15125, JCM 5490, JCM 9657, NBRC 15125, NCTC 8582
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