STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLT98691.1General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)    
Predicted Functional Partners:
OLT98692.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
gspI
Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
gspH
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.982
gspG
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.978
OLT98642.1
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.899
gspD
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.819
OLU08592.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.662
gspF
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.608
gspE
Type II secretion system protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.565
OLU08444.1
DUF1289 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
Your Current Organism:
Achromobacter denitrificans
NCBI taxonomy Id: 32002
Other names: A. denitrificans, ATCC 15173, Achromobacter xylosoxidans subsp. denitrificans, Alcaligenes denitrificans, Alcaligenes denitrificans denitrificans, Alcaligenes denitrificans subsp. denitrificans, Alcaligenes xylosoxidans subsp. denitrificans, Alcaligenes xylosoxydans denitrificans, CCUG 407, CIP 77.15, DSM 30026, IFO 15125, JCM 5490, JCM 9657, NBRC 15125, NCTC 8582
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