STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpxKTetraacyldisaccharide 4'-kinase. (306 aa)    
Predicted Functional Partners:
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase.
 
  
 0.969
lpxB
ipid-A-disaccharide synthase.
 
  
 0.928
waaA
3-deoxy-D-manno-octulosonic-acid transferase.
 
 
 0.925
htrB
Acyltransferase.
 
 
 0.892
kpsF
Carbohydrate isomerase KpsF/GutQ family protein.
 
   
 0.862
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
   
 0.843
lpxA
UDP-N-acetylglucosamine acyltransferase.
 
   
 0.830
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
 
   
 0.830
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family.
 
   
 0.810
nadE
NAD+ synthetase.
       0.800
Your Current Organism:
Campylobacter fetus
NCBI taxonomy Id: 32019
Other names: C. fetus subsp. fetus, Campylobacter fetus fetus, Campylobacter fetus subsp. fetus, Vibrio fetus subsp. intestinalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.