rnr protein (Campylobacter fetus) - STRING interaction network

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second shell of interactors

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Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

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[Homology]

Score

rnr

Ribonuclease R. (642 aa)

Predicted Functional Partners:

rppH

0.962

nudK

0.953

CZE50168.1

0.800

rplW

0.782

rplJ

0.781

rplV

0.775

rpmC

0.771

rplX

0.769

rplE

0.761

rplC

0.736

Your Current Organism:

Campylobacter fetus

NCBI taxonomy Id: 32019
Other names: C. fetus subsp. fetus, Campylobacter fetus fetus, Campylobacter fetus subsp. fetus, Vibrio fetus subsp. intestinalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CZE50168.1	rnr	ERS672215_00481	ERS672215_00482	DNA polymerase III subunit delta.	Ribonuclease R.	0.800
nudK	rnr	ERS672215_01616	ERS672215_00482	Uridine diphosphate glucose pyrophosphatase.	Ribonuclease R.	0.953
rnr	CZE50168.1	ERS672215_00482	ERS672215_00481	Ribonuclease R.	DNA polymerase III subunit delta.	0.800
rnr	nudK	ERS672215_00482	ERS672215_01616	Ribonuclease R.	Uridine diphosphate glucose pyrophosphatase.	0.953
rnr	rplC	ERS672215_00482	ERS672215_00005	Ribonuclease R.	50S ribosomal protein L3.	0.736
rnr	rplE	ERS672215_00482	ERS672215_00017	Ribonuclease R.	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.761
rnr	rplJ	ERS672215_00482	ERS672215_00919	Ribonuclease R.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.781
rnr	rplV	ERS672215_00482	ERS672215_00010	Ribonuclease R.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.775
rnr	rplW	ERS672215_00482	ERS672215_00007	Ribonuclease R.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.782
rnr	rplX	ERS672215_00482	ERS672215_00016	Ribonuclease R.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.769
rnr	rpmC	ERS672215_00482	ERS672215_00013	Ribonuclease R.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.771
rnr	rppH	ERS672215_00482	ERS672215_00472	Ribonuclease R.	Dinucleoside polyphosphate hydrolase.	0.962
rplC	rnr	ERS672215_00005	ERS672215_00482	50S ribosomal protein L3.	Ribonuclease R.	0.736
rplC	rplE	ERS672215_00005	ERS672215_00017	50S ribosomal protein L3.	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.999
rplC	rplJ	ERS672215_00005	ERS672215_00919	50S ribosomal protein L3.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
rplC	rplV	ERS672215_00005	ERS672215_00010	50S ribosomal protein L3.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplC	rplW	ERS672215_00005	ERS672215_00007	50S ribosomal protein L3.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rplX	ERS672215_00005	ERS672215_00016	50S ribosomal protein L3.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999
rplC	rpmC	ERS672215_00005	ERS672215_00013	50S ribosomal protein L3.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplE	rnr	ERS672215_00017	ERS672215_00482	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Ribonuclease R.	0.761