rpsQ_2 protein (Campylobacter fetus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpsQ_2

30S ribosomal protein S17. (67 aa)

Predicted Functional Partners:

xseA

0.974

gatA

0.837

guaB

0.831

metX

0.800

CZE50618.1

0.800

thiF_1

0.790

ileS

0.628

ispDF

0.514

hemC

0.465

ygaD

0.455

Your Current Organism:

Campylobacter fetus

NCBI taxonomy Id: 32019
Other names: C. fetus subsp. fetus, Campylobacter fetus fetus, Campylobacter fetus subsp. fetus, Vibrio fetus subsp. intestinalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CZE50618.1	gatA	ERS672215_00946	ERS672215_00942	Carbon-nitrogen family hydrolase.	aspartyl/glutamyl-tRNA amidotransferase subunit A.	0.864
CZE50618.1	guaB	ERS672215_00946	ERS672215_00943	Carbon-nitrogen family hydrolase.	Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.819
CZE50618.1	ileS	ERS672215_00946	ERS672215_00941	Carbon-nitrogen family hydrolase.	isoleucyl-tRNA synthetase.	0.582
CZE50618.1	metX	ERS672215_00946	ERS672215_00944	Carbon-nitrogen family hydrolase.	Homoserine O-acetyltransferase.	0.800
CZE50618.1	rpsQ_2	ERS672215_00946	ERS672215_00945	Carbon-nitrogen family hydrolase.	30S ribosomal protein S17.	0.800
CZE50618.1	thiF_1	ERS672215_00946	ERS672215_00947	Carbon-nitrogen family hydrolase.	Thiamine biosynthesis protein ThiF.	0.834
CZE50618.1	ygaD	ERS672215_00946	ERS672215_00940	Carbon-nitrogen family hydrolase.	Competence/damage-inducible domain-containing protein.	0.520
gatA	CZE50618.1	ERS672215_00942	ERS672215_00946	aspartyl/glutamyl-tRNA amidotransferase subunit A.	Carbon-nitrogen family hydrolase.	0.864
gatA	guaB	ERS672215_00942	ERS672215_00943	aspartyl/glutamyl-tRNA amidotransferase subunit A.	Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.858
gatA	ileS	ERS672215_00942	ERS672215_00941	aspartyl/glutamyl-tRNA amidotransferase subunit A.	isoleucyl-tRNA synthetase.	0.648
gatA	metX	ERS672215_00942	ERS672215_00944	aspartyl/glutamyl-tRNA amidotransferase subunit A.	Homoserine O-acetyltransferase.	0.817
gatA	rpsQ_2	ERS672215_00942	ERS672215_00945	aspartyl/glutamyl-tRNA amidotransferase subunit A.	30S ribosomal protein S17.	0.837
gatA	thiF_1	ERS672215_00942	ERS672215_00947	aspartyl/glutamyl-tRNA amidotransferase subunit A.	Thiamine biosynthesis protein ThiF.	0.800
gatA	ygaD	ERS672215_00942	ERS672215_00940	aspartyl/glutamyl-tRNA amidotransferase subunit A.	Competence/damage-inducible domain-containing protein.	0.455
guaB	CZE50618.1	ERS672215_00943	ERS672215_00946	Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	Carbon-nitrogen family hydrolase.	0.819
guaB	gatA	ERS672215_00943	ERS672215_00942	Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	aspartyl/glutamyl-tRNA amidotransferase subunit A.	0.858
guaB	ileS	ERS672215_00943	ERS672215_00941	Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	isoleucyl-tRNA synthetase.	0.710
guaB	ispDF	ERS672215_00943	ERS672215_01509	Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	Bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase protein.	0.475
guaB	metX	ERS672215_00943	ERS672215_00944	Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	Homoserine O-acetyltransferase.	0.915
guaB	rpsQ_2	ERS672215_00943	ERS672215_00945	Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	30S ribosomal protein S17.	0.831