STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serSUnannotated protein; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (414 aa)    
Predicted Functional Partners:
selA
Unannotated protein; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
     
 0.979
trpS
Unannotated protein; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.914
trmB
Unannotated protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
 0.896
acpP1
Unannotated protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.882
selB
Unannotated protein.
  
  
 0.845
cysS
Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.809
CFVI03293_1383
Unannotated protein.
  
   0.804
engA
Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
    0.775
aroK
Unannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.775
yedF
Unannotated protein; Belongs to the sulfur carrier protein TusA family.
      
 0.748
Your Current Organism:
Campylobacter fetus venerealis
NCBI taxonomy Id: 32020
Other names: ATCC 19438, C. fetus subsp. venerealis, CCUG 33899, CCUG 538, CIP 68.29, Campylobacter fetus subsp. venerealis, Campylobacter fetus subsp. venereus, DSM 18826, JCM 2528, LMG 6443, LMG:6443, NCTC 10354, Vibrio fetus subsp. venerealis, Vibrio foetus venerealis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.