node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplC | rplD | GCA_000788295_01451 | GCA_000788295_01452 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplS | GCA_000788295_01451 | GCA_000788295_01301 | Unannotated protein. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.991 |
rplC | rplT | GCA_000788295_01451 | GCA_000788295_00805 | Unannotated protein. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.992 |
rplC | rpmA | GCA_000788295_01451 | GCA_000788295_01540 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.991 |
rplC | rpsB | GCA_000788295_01451 | GCA_000788295_00843 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.991 |
rplC | rpsD | GCA_000788295_01451 | GCA_000788295_01365 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.993 |
rplC | rpsE | GCA_000788295_01451 | GCA_000788295_01468 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.996 |
rplC | rpsK | GCA_000788295_01451 | GCA_000788295_01366 | Unannotated protein. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.994 |
rplC | rpsR | GCA_000788295_01451 | GCA_000788295_00891 | Unannotated protein. | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.988 |
rplC | smpB | GCA_000788295_01451 | GCA_000788295_00076 | Unannotated protein. | Unannotated protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.934 |
rplD | rplC | GCA_000788295_01452 | GCA_000788295_01451 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein. | 0.999 |
rplD | rplS | GCA_000788295_01452 | GCA_000788295_01301 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.991 |
rplD | rplT | GCA_000788295_01452 | GCA_000788295_00805 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.993 |
rplD | rpmA | GCA_000788295_01452 | GCA_000788295_01540 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.990 |
rplD | rpsB | GCA_000788295_01452 | GCA_000788295_00843 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplD | rpsD | GCA_000788295_01452 | GCA_000788295_01365 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplD | rpsE | GCA_000788295_01452 | GCA_000788295_01468 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplD | rpsK | GCA_000788295_01452 | GCA_000788295_01366 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplD | rpsR | GCA_000788295_01452 | GCA_000788295_00891 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.989 |
rplD | smpB | GCA_000788295_01452 | GCA_000788295_00076 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.934 |