STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000788295_00321Unannotated protein. (67 aa)    
Predicted Functional Partners:
GCA_000788295_00320
Unannotated protein.
 
 
 
 0.942
pta
Unannotated protein.
    
 0.715
nifJ
Unannotated protein.
    
  0.699
GCA_000788295_00909
Unannotated protein.
    
  0.699
putA
Unannotated protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.671
GCA_000788295_01778
Unannotated protein.
   
    0.573
apt
Unannotated protein; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.570
topA
Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.504
GCA_000788295_00326
Unannotated protein.
  
   
 0.480
GCA_000788295_00318
Unannotated protein.
  
     0.463
Your Current Organism:
Campylobacter sputorum
NCBI taxonomy Id: 32024
Other names: C. sputorum biovar sputorum, Campylobacter sputorum biovar sputorum, Campylobacter sputorum bv. sputorum, Campylobacter sputorum sputorum, Campylobacter sputorum subsp. sputorum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.