Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000788295_00587 | bioH | GCA_000788295_00587 | GCA_000788295_01388 | Unannotated protein. | Unannotated protein. | 0.411 |
GCA_000788295_00587 | fliW2 | GCA_000788295_00587 | GCA_000788295_00586 | Unannotated protein. | Unannotated protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.703 |
GCA_000788295_00587 | lon | GCA_000788295_00587 | GCA_000788295_00588 | Unannotated protein. | Unannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.796 |
GCA_000788295_00587 | proC | GCA_000788295_00587 | GCA_000788295_00585 | Unannotated protein. | Unannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.596 |
GCA_000788295_01161 | proC | GCA_000788295_01161 | GCA_000788295_00585 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.541 |
GCA_000788295_01161 | putA | GCA_000788295_01161 | GCA_000788295_00746 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.601 |
astC | bioH | GCA_000788295_01010 | GCA_000788295_01388 | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Unannotated protein. | 0.458 |
astC | guaA | GCA_000788295_01010 | GCA_000788295_00316 | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | 0.553 |
astC | proA | GCA_000788295_01010 | GCA_000788295_00364 | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Unannotated protein; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.671 |
astC | proB | GCA_000788295_01010 | GCA_000788295_01322 | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Unannotated protein; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.675 |
astC | proC | GCA_000788295_01010 | GCA_000788295_00585 | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Unannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.509 |
astC | putA | GCA_000788295_01010 | GCA_000788295_00746 | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Unannotated protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.884 |
bioH | GCA_000788295_00587 | GCA_000788295_01388 | GCA_000788295_00587 | Unannotated protein. | Unannotated protein. | 0.411 |
bioH | astC | GCA_000788295_01388 | GCA_000788295_01010 | Unannotated protein. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.458 |
bioH | guaA | GCA_000788295_01388 | GCA_000788295_00316 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | 0.791 |
bioH | proC | GCA_000788295_01388 | GCA_000788295_00585 | Unannotated protein. | Unannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.680 |
bioH | putA | GCA_000788295_01388 | GCA_000788295_00746 | Unannotated protein. | Unannotated protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.848 |
fliW2 | GCA_000788295_00587 | GCA_000788295_00586 | GCA_000788295_00587 | Unannotated protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Unannotated protein. | 0.703 |
fliW2 | lon | GCA_000788295_00586 | GCA_000788295_00588 | Unannotated protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Unannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.649 |
fliW2 | proC | GCA_000788295_00586 | GCA_000788295_00585 | Unannotated protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Unannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.800 |
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