Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000788295_00784 | folD | GCA_000788295_00784 | GCA_000788295_00787 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.659 |
GCA_000788295_00784 | kdtA | GCA_000788295_00784 | GCA_000788295_00781 | Unannotated protein. | Unannotated protein. | 0.605 |
GCA_000788295_00784 | lepB | GCA_000788295_00784 | GCA_000788295_00786 | Unannotated protein. | Unannotated protein; Belongs to the peptidase S26 family. | 0.654 |
GCA_000788295_00784 | mqnC | GCA_000788295_00784 | GCA_000788295_00785 | Unannotated protein. | Unannotated protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2). | 0.783 |
GCA_000788295_00784 | rebM | GCA_000788295_00784 | GCA_000788295_00782 | Unannotated protein. | Unannotated protein. | 0.773 |
GCA_000788295_00784 | recG | GCA_000788295_00784 | GCA_000788295_00783 | Unannotated protein. | Unannotated protein. | 0.800 |
aas_1 | aas_2 | GCA_000788295_01784 | GCA_000788295_01085 | Unannotated protein. | Unannotated protein. | 0.907 |
aas_1 | bioF | GCA_000788295_01784 | GCA_000788295_00773 | Unannotated protein. | Unannotated protein. | 0.726 |
aas_1 | rebM | GCA_000788295_01784 | GCA_000788295_00782 | Unannotated protein. | Unannotated protein. | 0.681 |
aas_2 | aas_1 | GCA_000788295_01085 | GCA_000788295_01784 | Unannotated protein. | Unannotated protein. | 0.907 |
aas_2 | bioF | GCA_000788295_01085 | GCA_000788295_00773 | Unannotated protein. | Unannotated protein. | 0.728 |
aas_2 | rebM | GCA_000788295_01085 | GCA_000788295_00782 | Unannotated protein. | Unannotated protein. | 0.699 |
bioB | bioF | GCA_000788295_01787 | GCA_000788295_00773 | Unannotated protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Unannotated protein. | 0.972 |
bioB | rebM | GCA_000788295_01787 | GCA_000788295_00782 | Unannotated protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Unannotated protein. | 0.493 |
bioF | aas_1 | GCA_000788295_00773 | GCA_000788295_01784 | Unannotated protein. | Unannotated protein. | 0.726 |
bioF | aas_2 | GCA_000788295_00773 | GCA_000788295_01085 | Unannotated protein. | Unannotated protein. | 0.728 |
bioF | bioB | GCA_000788295_00773 | GCA_000788295_01787 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.972 |
bioF | kdtA | GCA_000788295_00773 | GCA_000788295_00781 | Unannotated protein. | Unannotated protein. | 0.434 |
bioF | rebM | GCA_000788295_00773 | GCA_000788295_00782 | Unannotated protein. | Unannotated protein. | 0.570 |
folD | GCA_000788295_00784 | GCA_000788295_00787 | GCA_000788295_00784 | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | Unannotated protein. | 0.659 |
page 1 of 3