Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000788295_01400 | GCA_000788295_01402 | GCA_000788295_01400 | GCA_000788295_01402 | Unannotated protein. | Unannotated protein. | 0.800 |
GCA_000788295_01400 | accD | GCA_000788295_01400 | GCA_000788295_01397 | Unannotated protein. | Unannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.782 |
GCA_000788295_01400 | ccp | GCA_000788295_01400 | GCA_000788295_01404 | Unannotated protein. | Unannotated protein. | 0.723 |
GCA_000788295_01400 | dus | GCA_000788295_01400 | GCA_000788295_01401 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.800 |
GCA_000788295_01400 | flgB_2 | GCA_000788295_01400 | GCA_000788295_01403 | Unannotated protein. | Unannotated protein. | 0.773 |
GCA_000788295_01400 | rlmH | GCA_000788295_01400 | GCA_000788295_01398 | Unannotated protein. | Unannotated protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.791 |
GCA_000788295_01400 | ruvA | GCA_000788295_01400 | GCA_000788295_01391 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.501 |
GCA_000788295_01400 | yjcC_2 | GCA_000788295_01400 | GCA_000788295_01405 | Unannotated protein. | Unannotated protein. | 0.723 |
GCA_000788295_01400 | yocK | GCA_000788295_01400 | GCA_000788295_01399 | Unannotated protein. | Unannotated protein. | 0.800 |
GCA_000788295_01402 | GCA_000788295_01400 | GCA_000788295_01402 | GCA_000788295_01400 | Unannotated protein. | Unannotated protein. | 0.800 |
GCA_000788295_01402 | accD | GCA_000788295_01402 | GCA_000788295_01397 | Unannotated protein. | Unannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.782 |
GCA_000788295_01402 | ccp | GCA_000788295_01402 | GCA_000788295_01404 | Unannotated protein. | Unannotated protein. | 0.723 |
GCA_000788295_01402 | dus | GCA_000788295_01402 | GCA_000788295_01401 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.800 |
GCA_000788295_01402 | flgB_2 | GCA_000788295_01402 | GCA_000788295_01403 | Unannotated protein. | Unannotated protein. | 0.793 |
GCA_000788295_01402 | recR | GCA_000788295_01402 | GCA_000788295_00731 | Unannotated protein. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.936 |
GCA_000788295_01402 | rlmH | GCA_000788295_01402 | GCA_000788295_01398 | Unannotated protein. | Unannotated protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.791 |
GCA_000788295_01402 | ruvA | GCA_000788295_01402 | GCA_000788295_01391 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.666 |
GCA_000788295_01402 | yjcC_2 | GCA_000788295_01402 | GCA_000788295_01405 | Unannotated protein. | Unannotated protein. | 0.723 |
GCA_000788295_01402 | yocK | GCA_000788295_01402 | GCA_000788295_01399 | Unannotated protein. | Unannotated protein. | 0.801 |
accD | GCA_000788295_01400 | GCA_000788295_01397 | GCA_000788295_01400 | Unannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Unannotated protein. | 0.782 |
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