STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD36300.1Pilus assembly protein FimV. (926 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.906
SFD32874.1
Type IV pilus assembly protein PilO.
  
  
 0.828
SFD84764.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
  
 0.822
SFD32859.1
Type IV pilus assembly protein PilN.
  
  
 0.813
SFD32895.1
Type IV pilus assembly protein PilQ.
  
  
 0.793
SFD84786.1
Twitching motility protein PilI.
  
  
  0.784
SFD80123.1
Protein of unknown function.
  
 
 
 0.780
SFD32885.1
Type IV pilus assembly protein PilP.
  
  
 0.761
SFE13304.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
     0.757
SFD96534.1
Type IV pilus assembly protein PilZ.
  
     0.740
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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