Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD33003.1 | SFD37064.1 | SAMN04489710_10180 | SAMN04489710_101340 | Glutamate synthase (NADH) large subunit. | Aminotransferase class I and II. | 0.857 |
SFD33003.1 | SFD37080.1 | SAMN04489710_10180 | SAMN04489710_101341 | Glutamate synthase (NADH) large subunit. | Aminotransferase class I and II. | 0.857 |
SFD33003.1 | SFD46757.1 | SAMN04489710_10180 | SAMN04489710_102271 | Glutamate synthase (NADH) large subunit. | Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase. | 0.694 |
SFD33003.1 | SFD62276.1 | SAMN04489710_10180 | SAMN04489710_10464 | Glutamate synthase (NADH) large subunit. | Chorismate mutase. | 0.467 |
SFD33003.1 | SFD90152.1 | SAMN04489710_10180 | SAMN04489710_108121 | Glutamate synthase (NADH) large subunit. | Indolepyruvate ferredoxin oxidoreductase. | 0.975 |
SFD33003.1 | SFD97186.1 | SAMN04489710_10180 | SAMN04489710_110158 | Glutamate synthase (NADH) large subunit. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.976 |
SFD33003.1 | SFE29231.1 | SAMN04489710_10180 | SAMN04489710_12522 | Glutamate synthase (NADH) large subunit. | Dihydrolipoamide dehydrogenase. | 0.973 |
SFD33003.1 | aroA | SAMN04489710_10180 | SAMN04489710_10462 | Glutamate synthase (NADH) large subunit. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.805 |
SFD33003.1 | gcvP | SAMN04489710_10180 | SAMN04489710_104227 | Glutamate synthase (NADH) large subunit. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.975 |
SFD37064.1 | SFD33003.1 | SAMN04489710_101340 | SAMN04489710_10180 | Aminotransferase class I and II. | Glutamate synthase (NADH) large subunit. | 0.857 |
SFD37064.1 | SFD37080.1 | SAMN04489710_101340 | SAMN04489710_101341 | Aminotransferase class I and II. | Aminotransferase class I and II. | 0.994 |
SFD37064.1 | SFD46757.1 | SAMN04489710_101340 | SAMN04489710_102271 | Aminotransferase class I and II. | Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase. | 0.703 |
SFD37064.1 | SFD62276.1 | SAMN04489710_101340 | SAMN04489710_10464 | Aminotransferase class I and II. | Chorismate mutase. | 0.682 |
SFD37064.1 | SFD89152.1 | SAMN04489710_101340 | SAMN04489710_10848 | Aminotransferase class I and II. | S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine. | 0.641 |
SFD37064.1 | SFD90152.1 | SAMN04489710_101340 | SAMN04489710_108121 | Aminotransferase class I and II. | Indolepyruvate ferredoxin oxidoreductase. | 0.741 |
SFD37064.1 | SFD97186.1 | SAMN04489710_101340 | SAMN04489710_110158 | Aminotransferase class I and II. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.786 |
SFD37064.1 | SFE29231.1 | SAMN04489710_101340 | SAMN04489710_12522 | Aminotransferase class I and II. | Dihydrolipoamide dehydrogenase. | 0.694 |
SFD37064.1 | aroA | SAMN04489710_101340 | SAMN04489710_10462 | Aminotransferase class I and II. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.664 |
SFD37064.1 | gcvP | SAMN04489710_101340 | SAMN04489710_104227 | Aminotransferase class I and II. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.674 |
SFD37080.1 | SFD33003.1 | SAMN04489710_101341 | SAMN04489710_10180 | Aminotransferase class I and II. | Glutamate synthase (NADH) large subunit. | 0.857 |
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