STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD56695.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (318 aa)    
Predicted Functional Partners:
SFD39661.1
Lipoprotein NlpD.
 
   
 0.713
SFE21702.1
Flagellar motor switch protein FliM.
    
   0.657
SFD44720.1
Cyanophycin synthetase.
    
 0.547
SFD44739.1
Cyanophycin synthetase.
    
 0.547
SFD56676.1
Cardiolipin synthase.
       0.527
SFD53225.1
Membrane-bound lytic murein transglycosylase D.
  
 
 0.469
SFD95891.1
Site-2 protease. Metallo peptidase. MEROPS family M50B.
 
  
 0.400
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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