Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD36640.1 | SFD47617.1 | SAMN04489710_101314 | SAMN04489710_102319 | Threonine synthase. | L-threonine ammonia-lyase. | 0.971 |
SFD36640.1 | SFD65306.1 | SAMN04489710_101314 | SAMN04489710_104288 | Threonine synthase. | Acetolactate synthase, large subunit. | 0.421 |
SFD36640.1 | SFD65320.1 | SAMN04489710_101314 | SAMN04489710_104289 | Threonine synthase. | Acetolactate synthase, small subunit. | 0.789 |
SFD36640.1 | SFD70077.1 | SAMN04489710_101314 | SAMN04489710_10542 | Threonine synthase. | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.403 |
SFD36640.1 | SFD72297.1 | SAMN04489710_101314 | SAMN04489710_105172 | Threonine synthase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.446 |
SFD36640.1 | SFD72701.1 | SAMN04489710_101314 | SAMN04489710_105199 | Threonine synthase. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.981 |
SFD36640.1 | SFD75301.1 | SAMN04489710_101314 | SAMN04489710_105360 | Threonine synthase. | Threonine dehydratase. | 0.915 |
SFD36640.1 | ilvA | SAMN04489710_101314 | SAMN04489710_10716 | Threonine synthase. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.979 |
SFD36640.1 | trpB | SAMN04489710_101314 | SAMN04489710_101289 | Threonine synthase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.460 |
SFD47617.1 | SFD36640.1 | SAMN04489710_102319 | SAMN04489710_101314 | L-threonine ammonia-lyase. | Threonine synthase. | 0.971 |
SFD47617.1 | SFD65306.1 | SAMN04489710_102319 | SAMN04489710_104288 | L-threonine ammonia-lyase. | Acetolactate synthase, large subunit. | 0.962 |
SFD47617.1 | SFD65320.1 | SAMN04489710_102319 | SAMN04489710_104289 | L-threonine ammonia-lyase. | Acetolactate synthase, small subunit. | 0.981 |
SFD47617.1 | SFD70077.1 | SAMN04489710_102319 | SAMN04489710_10542 | L-threonine ammonia-lyase. | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.884 |
SFD47617.1 | SFD72297.1 | SAMN04489710_102319 | SAMN04489710_105172 | L-threonine ammonia-lyase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.884 |
SFD47617.1 | SFD72701.1 | SAMN04489710_102319 | SAMN04489710_105199 | L-threonine ammonia-lyase. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.893 |
SFD47617.1 | SFD75301.1 | SAMN04489710_102319 | SAMN04489710_105360 | L-threonine ammonia-lyase. | Threonine dehydratase. | 0.777 |
SFD47617.1 | ilvA | SAMN04489710_102319 | SAMN04489710_10716 | L-threonine ammonia-lyase. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.891 |
SFD47617.1 | trpA | SAMN04489710_102319 | SAMN04489710_101288 | L-threonine ammonia-lyase. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.913 |
SFD47617.1 | trpB | SAMN04489710_102319 | SAMN04489710_101289 | L-threonine ammonia-lyase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.930 |
SFD65306.1 | SFD36640.1 | SAMN04489710_104288 | SAMN04489710_101314 | Acetolactate synthase, large subunit. | Threonine synthase. | 0.421 |
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