STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD79686.1Two component transcriptional regulator, LuxR family. (255 aa)    
Predicted Functional Partners:
SFD79665.1
Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX.
 0.995
SFD44542.1
Hypothetical protein.
   
 0.966
SFD80877.1
HAMP domain-containing protein.
   
 0.965
SFE17923.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
   
 0.965
SFE21803.1
Signal transduction histidine kinase.
 
 0.964
SFE06887.1
PAS domain S-box-containing protein.
  
 0.955
SFD46515.1
Signal transduction histidine kinase.
 0.947
SFD94026.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.939
SFE12242.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.928
SFD58384.1
PAS domain S-box-containing protein.
   
 0.898
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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