STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD78066.1Type III secretion protein L. (301 aa)    
Predicted Functional Partners:
SFD78042.1
ATP synthase in type III secretion protein N.
  
 
 0.988
SFE20851.1
Flagellar protein FlgJ.
  
  
 0.970
SFE21614.1
Flagellar motor switch protein FliG.
  
 
 0.964
SFD93468.1
Type III secretion system ATPase, FliI/YscN.
  
 
 0.949
SFE21644.1
Flagellum-specific ATP synthase.
  
 
 0.949
SFD77789.1
Type III secretion protein Q.
  
 
 0.940
SFD93376.1
Flagellar motor switch protein FliN/FliY.
  
 
 0.940
SFE21713.1
Flagellar motor switch protein FliN/FliY.
  
 
 0.940
SFD78095.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
  
 0.939
SFD55829.1
Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.911
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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