Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD39683.1 | SFD86188.1 | SAMN04489710_101508 | SAMN04489710_107160 | Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 23S rRNA pseudouridine2604 synthase. | 0.536 |
SFD39683.1 | SFE01395.1 | SAMN04489710_101508 | SAMN04489710_111162 | Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.536 |
SFD39683.1 | aroA | SAMN04489710_101508 | SAMN04489710_10462 | Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.897 |
SFD39683.1 | der | SAMN04489710_101508 | SAMN04489710_101518 | Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.800 |
SFD70311.1 | SFD86188.1 | SAMN04489710_10556 | SAMN04489710_107160 | Exodeoxyribonuclease-3. | 23S rRNA pseudouridine2604 synthase. | 0.644 |
SFD70311.1 | SFE01181.1 | SAMN04489710_10556 | SAMN04489710_111151 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.947 |
SFD70311.1 | SFE01395.1 | SAMN04489710_10556 | SAMN04489710_111162 | Exodeoxyribonuclease-3. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.669 |
SFD70311.1 | SFE12835.1 | SAMN04489710_10556 | SAMN04489710_11543 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.799 |
SFD86161.1 | SFD86176.1 | SAMN04489710_107158 | SAMN04489710_107159 | 2-polyprenyl-6-methoxyphenol hydroxylase. | Glyoxylase, beta-lactamase superfamily II. | 0.594 |
SFD86161.1 | SFD86188.1 | SAMN04489710_107158 | SAMN04489710_107160 | 2-polyprenyl-6-methoxyphenol hydroxylase. | 23S rRNA pseudouridine2604 synthase. | 0.581 |
SFD86176.1 | SFD86161.1 | SAMN04489710_107159 | SAMN04489710_107158 | Glyoxylase, beta-lactamase superfamily II. | 2-polyprenyl-6-methoxyphenol hydroxylase. | 0.594 |
SFD86176.1 | SFD86188.1 | SAMN04489710_107159 | SAMN04489710_107160 | Glyoxylase, beta-lactamase superfamily II. | 23S rRNA pseudouridine2604 synthase. | 0.862 |
SFD86176.1 | SFD86197.1 | SAMN04489710_107159 | SAMN04489710_107161 | Glyoxylase, beta-lactamase superfamily II. | Uncharacterized membrane protein YjgN, DUF898 family. | 0.492 |
SFD86188.1 | SFD39683.1 | SAMN04489710_107160 | SAMN04489710_101508 | 23S rRNA pseudouridine2604 synthase. | Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.536 |
SFD86188.1 | SFD70311.1 | SAMN04489710_107160 | SAMN04489710_10556 | 23S rRNA pseudouridine2604 synthase. | Exodeoxyribonuclease-3. | 0.644 |
SFD86188.1 | SFD86161.1 | SAMN04489710_107160 | SAMN04489710_107158 | 23S rRNA pseudouridine2604 synthase. | 2-polyprenyl-6-methoxyphenol hydroxylase. | 0.581 |
SFD86188.1 | SFD86176.1 | SAMN04489710_107160 | SAMN04489710_107159 | 23S rRNA pseudouridine2604 synthase. | Glyoxylase, beta-lactamase superfamily II. | 0.862 |
SFD86188.1 | SFD86197.1 | SAMN04489710_107160 | SAMN04489710_107161 | 23S rRNA pseudouridine2604 synthase. | Uncharacterized membrane protein YjgN, DUF898 family. | 0.497 |
SFD86188.1 | SFE01181.1 | SAMN04489710_107160 | SAMN04489710_111151 | 23S rRNA pseudouridine2604 synthase. | Exodeoxyribonuclease-3. | 0.644 |
SFD86188.1 | SFE01395.1 | SAMN04489710_107160 | SAMN04489710_111162 | 23S rRNA pseudouridine2604 synthase. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.637 |
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