STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD89637.1HD domain-containing protein. (141 aa)    
Predicted Functional Partners:
SFD44542.1
Hypothetical protein.
  
 
 0.915
rpsM
SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
    
  0.845
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
    
  0.836
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.834
SFD80877.1
HAMP domain-containing protein.
    
 0.833
SFE17923.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
    
 0.833
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.831
rpsL
SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.828
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
 
 
   0.828
SFD53447.1
Large subunit ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.824
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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