STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE00250.1Type VI secretion system protein ImpB. (182 aa)    
Predicted Functional Partners:
SFE00233.1
Type VI secretion system protein ImpC.
 0.999
SFE00488.1
Type VI secretion system secreted protein Hcp.
 
 0.998
SFE00219.1
Type VI secretion system protein ImpE.
 
   0.996
SFE00347.1
Type VI secretion system protein ImpK.
 
  
 0.995
SFE00295.1
Type VI secretion system protein ImpA.
 
 
 0.991
SFE00371.1
Type VI secretion system protein ImpJ.
 
 
 0.991
SFE00152.1
Type VI secretion system protein ImpH.
 
 
 0.979
SFE00200.1
Type VI secretion system protein ImpF.
 
  
 0.978
SFE00174.1
Type VI secretion system protein ImpG.
 
  
 0.967
SFE00386.1
Type VI secretion system protein VasD.
 
  
 0.965
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.